JRA Publications

Publications resulting from ASSEMBLE Joint Research Activities



- Ota S & Vaulot D. Lotharella reticulosa sp. nov.: A highly reticulated network forming Chlorarachniophyte from the Mediterranean Sea. In Protist. 163:91-104. Read more.

- Heesch S, Day JG, Yamagishi T, Kawai H & Küpper FC. Cryopreservation of the model alga Ectocarpus (Phaeophyceae). In Cryoletters 33, 327-336. Read more.




- Zingone A, Forlani G, Percopo I, & Montresor M. Morphological characterization of Phaeocystis antarctica (Prymnesiophyceae). In Phycologia. doi: 10.2216/11-36.1.

- Reid EL, Worthy CA, Probert I, Ali ST, Love J, Napier J, Littlechild JA, Somerfield PJ & Allen MJ. Coccolithophores: Functional Biodiversity, Enzymes and Bioprospecting. In Marine Drugs. doi:10.3390/md9040586.

- Ota S, Kudo A & Ishida K. Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour. In Phycologia. doi: 10.2216/09-102.1.

- Kher CP, Doerder FP, Cooper J, Ikonomi P, Achilles-Day U, Küpper FC, Lynn DH. Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit I (cox-1) barcode. In Protist. doi: 10.1016/j.protis.2010.03.004

- Harnstrom K, Ellegaard M, Andersen T, Godhe A. Hundred years of genetic structure in a sediment revived diatom population. In Proceeding of the National Academy of Sciences. doi:10.1073/pnas.1013528108

- Hagino K, Bendif EM, Young JR, Takano Y, Probert I, Horiguchi T, de Vargas C & Okada H. New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliania huxleyi (Prymnesiophyceae) from the coxIb-ATP4 genes. In Journal of Phycology. doi: 10.1111/j.1529-8817.2011.01053.x

- Bendif EM, Probert I, Hervé A, Billard C, Goux D, Lelong C, Cadoret JP, & Véron B. A taxonomic reassessment of the Pavlovophyceae (Haptophyta). In Protist. doi: 10.1016/j.protis.2011.05.001.


- Bendif EL, Probert I, Hervé A, Billard C, Goux D, Lelong C, Cadoret JP, and Véron B. Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A Reassessment. In Protist, Vol. 162, 738–761. http://dx.doi.org/10.1016/j.protis.2011.05.001



- Edvardsen B, Eikrem W, Throndsen J, Sáez AG, Probert I, Medlin LK. Ribosomal DNA phylogenies and a morphological revision set the basis for a revised taxonomy of Prymnesiales (Haptophyta). In Eur. J. Phycol. 46(3): 202-228. DOI:10.1080/09670262.2011.594095

- Jouenne F, Eikrem W, Le Gall F, Marie D, Johnsen J, and Vaulot D. Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a Solitary Coccoid Prasinophyte from the South-East Pacific Ocean. In Protist, Vol. 162, 70–84. DOI: 10.1016/j.protis.2010.04.005

- Krueger-Hadfield SA, Collén J, Daguin-Thiébaut C, and Valero M. Genetic Population Structure And Mating System In Chondrus crispus (Rhodophyta). In J. Phycol., 47, 440–450. DOI: 10.1111/j.1529-8817.2011.00995.x



- Stern RF, Horak A, Andrew RL, Coffroth MA, Andersen RA, Küpper FC, Jameson I, Hoppenrath M, Veron B, Kasai F, Brand J, James ER & Keeling PJ. Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments. In PLoS ONE. doi:10.1371/journal.pone.0013991.

- Godhe A, Härnström K. Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi. In Molecular Ecology.
doi: 10.1111/j.1365-294X.2010.04841.x

- Heesch S, Cho GY, Peters AF, Le Corguille G, Falentin C, Boutet G, Coedel S, Jubin C, Samson G, Corre E, Coelho SM, and Cock JM. A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence. In New Phytologist, 188: 42–51

- Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde A, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, and Bowler C. Digital expression profiling of novel diatom transcripts provides insight into their biological functions. In Genome Biology, 11:R85

- Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, and Beja O. Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. In The ISME Journal, 4, 1044–1052. DOI:10.1038/ismej.2010.25

- Rafael MS, Marques CL, Parameswaran V, Cancela ML, and Laize V. Fish bone-derived cell lines: an alternative in vitro cell system to study bone biology. In J. Appl. Ichthyol. 26, 230–234



- Saravanany V, and Godhe A. Genetic heterogeneity and physiological variation among seasonally separated clones of Skeletonema marinoi (Bacillariophyceae) in the Gullmar Fjord, Sweden. Eur. J. Phycol. 45(2): 177–190



- Siano R, Montresor M, Probert I, Not F, and De Vargas C. Pelagodinium gen. nov.and P. béii comb.nov.,a Dinoflagellate Symbiont of Planktonic Foraminifera. In Protist, Vol.161,385–399

 - Viegas CSB, Conceicao N, Fazenda C, Simes DC, and Cancela ML. Expression of Gla-rich protein (GRP) in newly developed cartilage-derived cell cultures from sturgeon (Acipenser naccarii).In J. Appl. Ichthyol. 26, 214–218




- Gady A, Hermans F, Van de Wal M, van Loo E, Visser R, and Bachem C. Implementation of two high through-put techniques in a novel application: detecting point mutations in large EMS mutated plant populations. In Plant Methods, 5:13






- Foulon, E., Jouenne, F., Desdevises, Y., Houdan, A., Derelle, E., Le Gall, F., Vaulot, D. & Simon, N. Revision of the genus Micromonas (Manton et Parke) (Chlorophyta, Mamiellophyceae), of the species M. pusilla (Butcher) Manton et Parke, and description of two novel species, based on the genomic and phenotypic characterization of cultured isolates. In Protist
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